D. Lovley, E. Phillips, Y. Gorby, and E. Landa, Microbial reduction of uranium, Nature, vol.350, issue.6317, pp.413-416, 1991.
DOI : 10.1038/350413a0

D. Lovley and E. Phillips, Reduction of uranium by Desulfovibrio desulfuricans, Appl Environ Microbiol, vol.58, pp.850-856, 1992.

A. Francis, C. Dodge, F. Lu, G. Halada, and C. Clayton, XPS and XANES Studies of Uranium Reduction by Clostridium sp, Environmental Science & Technology, vol.28, issue.4, pp.636-639, 1994.
DOI : 10.1021/es00053a016

J. Wall and L. Krumholz, Uranium Reduction, Annual Review of Microbiology, vol.60, issue.1, pp.149-166, 2006.
DOI : 10.1146/annurev.micro.59.030804.121357

H. Beller, Anaerobic, Nitrate-Dependent Oxidation of U(IV) Oxide Minerals by the Chemolithoautotrophic Bacterium Thiobacillus denitrificans, Applied and Environmental Microbiology, vol.71, issue.4, pp.2170-2174, 2005.
DOI : 10.1128/AEM.71.4.2170-2174.2005

K. Weber, J. Thrash, J. Van-trump, L. Achenbach, and J. Coates, Environmental and Taxonomic Bacterial Diversity of Anaerobic Uranium(IV) Bio-Oxidation, Applied and Environmental Microbiology, vol.77, issue.13, 2011.
DOI : 10.1128/AEM.02539-10

M. Merroun and S. Selenska-pobell, Bacterial interactions with uranium: An environmental perspective, Journal of Contaminant Hydrology, vol.102, issue.3-4, pp.285-295, 2008.
DOI : 10.1016/j.jconhyd.2008.09.019

M. Fields, T. Yan, S. Rhee, S. Carroll, and P. Jardine, Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid??????uranium waste, FEMS Microbiology Ecology, vol.53, issue.3, pp.417-428, 2005.
DOI : 10.1016/j.femsec.2005.01.010

D. Akob, H. Mills, and J. Kostka, Metabolically active microbial communities in uranium-contaminated subsurface sediments, FEMS Microbiology Ecology, vol.59, issue.1, pp.95-107, 2007.
DOI : 10.1111/j.1574-6941.2006.00203.x

P. Waldron, L. Wu, J. Van-nostrand, C. Schadt, and Z. He, Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels, Environmental Science & Technology, vol.43, issue.10, pp.3529-3534, 2009.
DOI : 10.1021/es803423p

C. Hemme, Y. Deng, T. Gentry, M. Fields, and L. Wu, Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community, The ISME Journal, vol.62, issue.5, pp.660-672, 2010.
DOI : 10.1371/journal.pbio.0050016

A. Schippers, R. Hallmann, S. Wentzien, and W. Sand, Microbial diversity in uranium mine waste heaps, Appl Environ Microbiol, vol.61, pp.2930-2935, 1995.

Y. Chang, A. Peacock, P. Long, J. Stephen, and J. Mckinley, Diversity and Characterization of Sulfate-Reducing Bacteria in Groundwater at a Uranium Mill Tailings Site, Applied and Environmental Microbiology, vol.67, issue.7, pp.3149-3160, 2001.
DOI : 10.1128/AEM.67.7.3149-3160.2001

D. Elias, L. Krumholz, D. Wong, P. Long, and J. Suflita, Characterization of Microbial Activities and U Reduction in a Shallow Aquifer Contaminated by Uranium Mill Tailings, Microbial Ecology, vol.46, issue.1, pp.83-91, 2003.
DOI : 10.1007/s00248-002-1060-x

G. Radeva and S. Selenska-pobell, Bacterial diversity in water samples from uranium wastes as demonstrated by 16S rDNA and ribosomal intergenic spacer amplification retrievals, Canadian Journal of Microbiology, vol.51, issue.11, pp.910-923, 2005.
DOI : 10.1139/w05-082

G. Wolfaardt, M. Hendry, and D. Korber, Microbial distribution and diversity in saturated, high pH, uranium mine tailings, Saskatchewan, Canada, Canadian Journal of Microbiology, vol.54, issue.11, pp.932-940, 2008.
DOI : 10.1139/W08-084

G. Rastogi, S. Osman, P. Vaishampayan, G. Andersen, and L. Stetler, Microbial Diversity in Uranium Mining-Impacted Soils as Revealed by High-Density 16S Microarray and Clone Library, Microbial Ecology, vol.54, issue.1, pp.94-108, 2010.
DOI : 10.1007/978-3-642-55668-5_53

D. Holmes, K. Finneran, O. Neil, R. Lovley, and D. , Enrichment of Members of the Family Geobacteraceae Associated with Stimulation of Dissimilatory Metal Reduction in Uranium-Contaminated Aquifer Sediments, Applied and Environmental Microbiology, vol.68, issue.5, pp.2300-2306, 2002.
DOI : 10.1128/AEM.68.5.2300-2306.2002

K. Nevin, K. Finneran, and D. Lovley, Microorganisms Associated with Uranium Bioremediation in a High-Salinity Subsurface Sediment, Applied and Environmental Microbiology, vol.69, issue.6, pp.3672-3675, 2003.
DOI : 10.1128/AEM.69.6.3672-3675.2003

Y. Suzuki, S. Kelly, K. Kemner, and J. Banfield, Microbial Populations Stimulated for Hexavalent Uranium Reduction in Uranium Mine Sediment, Applied and Environmental Microbiology, vol.69, issue.3, pp.1337-1346, 2003.
DOI : 10.1128/AEM.69.3.1337-1346.2003

N. North, S. Dollhopf, L. Petrie, J. Istok, and D. Balkwill, Change in Bacterial Community Structure during In Situ Biostimulation of Subsurface Sediment Cocontaminated with Uranium and Nitrate, Applied and Environmental Microbiology, vol.70, issue.8, pp.4911-4920, 2004.
DOI : 10.1128/AEM.70.8.4911-4920.2004

E. Brodie, T. Desantis, D. Joyner, S. Baek, and J. Larsen, Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation, Applied and Environmental Microbiology, vol.72, issue.9, pp.6288-6298, 2006.
DOI : 10.1128/AEM.00246-06

M. Michalsen, A. Peacock, A. Spain, A. Smithgal, and D. White, Changes in Microbial Community Composition and Geochemistry during Uranium and Technetium Bioimmobilization, Applied and Environmental Microbiology, vol.73, issue.18, pp.5885-5896, 2007.
DOI : 10.1128/AEM.00309-07

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2074911

E. Cardenas, W. Wu, M. Leigh, C. J. Carroll, and S. , Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels, Applied and Environmental Microbiology, vol.74, issue.12, pp.3718-3729, 2008.
DOI : 10.1128/AEM.02308-07

S. Mohanty, B. Kollah, D. Hedrick, A. Peacock, and R. Kukkadapu, Biogeochemical Processes In Ethanol Stimulated Uranium-contaminated Subsurface Sediments, Environmental Science & Technology, vol.42, issue.12, pp.4384-4390, 2008.
DOI : 10.1021/es703082v

URL : http://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1148&context=usdoepub

D. Moreels, G. Crosson, C. Garafola, D. Monteleone, and S. Taghavi, Microbial community dynamics in uranium contaminated subsurface sediments under biostimulated conditions with high nitrate and nickel pressure, Environmental Science and Pollution Research, vol.40, issue.12, pp.481-491, 2008.
DOI : 10.1016/j.scitotenv.2005.12.029

C. Hwang, W. Wu, T. Gentry, C. J. Corbin, and G. , Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths, The ISME Journal, vol.62, issue.1, pp.47-64, 2009.
DOI : 10.1007/s00248-005-8002-3

M. Xu, W. Wu, L. Wu, Z. He, and J. Van-nostrand, Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation, The ISME Journal, vol.62, issue.8, pp.1060-1070, 2010.
DOI : 10.1073/pnas.0709016105

A. Geissler and S. Selenska-pobell, Addition of U(VI) to a uranium mining waste sample and resulting changes in the indigenous bacterial community, Geobiology, vol.22, issue.4, pp.275-285, 2005.
DOI : 10.1111/j.1574-6968.1999.tb13384.x

M. Martins, M. Faleiro, S. Chaves, R. Tenreiro, and M. Costa, Effect of uranium (VI) on two sulphate-reducing bacteria cultures from a uranium mine site, Science of The Total Environment, vol.408, issue.12, pp.2621-2628, 2010.
DOI : 10.1016/j.scitotenv.2010.02.032

J. Catalano, G. Brown, and J. , Analysis of uranyl-bearing phases by EXAFS spectroscopy: Interferences, multiple scattering, accuracy of structural parameters, and spectral differences, American Mineralogist, vol.89, issue.7, pp.1004-1021, 2004.
DOI : 10.2138/am-2004-0711

F. Farges, C. Ponader, G. Calas, G. Brown, and J. , Structural environments of incompatible elements in silicate glass/melt systems: II. UIV, UV, and UVI, Geochimica et Cosmochimica Acta, vol.56, issue.12, pp.4205-4220, 1992.
DOI : 10.1016/0016-7037(92)90261-G

A. Bruun, K. Finster, H. Gunnlaugsson, P. Nornberg, and M. Friedrich, A Comprehensive Investigation on Iron Cycling in a Freshwater Seep Including Microscopy, Cultivation and Molecular Community Analysis, Geomicrobiology Journal, vol.25, issue.1, pp.15-34, 2010.
DOI : 10.1007/BF00992910

K. Benzerara, G. Morin, T. Yoon, J. Miot, and T. Tyliszczak, Nanoscale study of As biomineralization in an acid mine drainage system, Geochimica et Cosmochimica Acta, vol.72, issue.16, pp.3949-3963, 2008.
DOI : 10.1016/j.gca.2008.05.046

URL : https://hal.archives-ouvertes.fr/hal-00365847

M. Merroun, M. Nedelkova, A. Rossberg, C. Hennig, and S. Selenska-pobell, Interaction mechanisms of bacterial strains isolated from extreme habitats with uranium, Radiochimica Acta, vol.49, issue.9-11, pp.723-729, 2006.
DOI : 10.1007/BF01700133

M. Beazley, R. Martinez, P. Sobecky, S. Webb, and M. Taillefert, Uranium Biomineralization as a Result of Bacterial Phosphatase Activity:?? Insights from Bacterial Isolates from a Contaminated Subsurface, Environmental Science & Technology, vol.41, issue.16, pp.5701-5708, 2007.
DOI : 10.1021/es070567g

M. Nedelkova, M. Merroun, A. Rossberg, C. Hennig, and S. Selenska-pobell, Microbacterium isolates from the vicinity of a radioactive waste depository and their interactions with uranium, FEMS Microbiology Ecology, vol.59, issue.3, pp.694-705, 2007.
DOI : 10.1111/j.1574-6941.2006.00261.x

S. Barns, E. Cain, L. Sommerville, and C. Kuske, Acidobacteria Phylum Sequences in Uranium-Contaminated Subsurface Sediments Greatly Expand the Known Diversity within the Phylum, Applied and Environmental Microbiology, vol.73, issue.9, pp.3113-3116, 2007.
DOI : 10.1128/AEM.02012-06

C. Abulencia, D. Wyborski, J. Garcia, M. Podar, and W. Chen, Environmental Whole-Genome Amplification To Access Microbial Populations in Contaminated Sediments, Applied and Environmental Microbiology, vol.72, issue.5, pp.3291-3301, 2006.
DOI : 10.1128/AEM.72.5.3291-3301.2006

J. Coates, D. Ellis, C. Gaw, and D. Lovley, Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer, International Journal of Systematic Bacteriology, vol.49, issue.4, pp.1615-1622, 1999.
DOI : 10.1099/00207713-49-4-1615

E. Burkhardt, D. Akob, S. Bischoff, J. Sitte, and J. Kostka, Impact of Biostimulated Redox Processes on Metal Dynamics in an Iron-Rich Creek Soil of a Former Uranium Mining Area, Environmental Science & Technology, vol.44, issue.1, pp.177-183, 2010.
DOI : 10.1021/es902038e

E. Shelobolina, M. Coppi, A. Korenevsky, L. Didonato, and S. Sullivan, Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens, BMC Microbiology, vol.7, issue.1, pp.7-16, 2007.
DOI : 10.1186/1471-2180-7-16

F. Ferris, R. Hallberg, B. Lyvén, and K. Pedersen, Retention of strontium, cesium, lead and uranium by bacterial iron oxides from a subterranean environment, Applied Geochemistry, vol.15, issue.7, pp.1035-1042, 2000.
DOI : 10.1016/S0883-2927(99)00093-1

N. Guessan, A. Moon, H. Peacock, A. Tan, H. Sinha et al., Postbiostimulation microbial community structure changes that control the reoxidation of uranium, FEMS Microbiology Ecology, vol.74, issue.1, pp.184-195, 2010.
DOI : 10.1111/j.1574-6941.2010.00933.x

O. Proux, X. Biquard, E. Lahera, J. Menthonnex, and A. Prat, FAME: a new beamline for x-ray absorption investigations of very-diluted systems of environmental, material and biological interests, Phys Scr, vol.970, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00386441

J. Zhou, M. Bruns, and J. Tiedje, DNA recovery from soils of diverse composition, Appl Environ Microbiol, vol.62, pp.316-322, 1996.

G. Muyzer, E. De-waal, and A. Uitterlinden, Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl Environ Microbiol, vol.59, pp.695-700, 1993.

C. Yang and D. Crowley, Rhizosphere Microbial Community Structure in Relation to Root Location and Plant Iron Nutritional Status, Applied and Environmental Microbiology, vol.66, issue.1, pp.345-351, 2000.
DOI : 10.1128/AEM.66.1.345-351.2000

URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC91828/pdf

C. Schabereiter-gurtner, W. Lubitz, and S. Rölleke, Application of broad-range 16S rRNA PCR amplification and DGGE fingerprinting for detection of tick-infecting bacteria, Journal of Microbiological Methods, vol.52, issue.2, pp.251-260, 2003.
DOI : 10.1016/S0167-7012(02)00186-0

S. Green, F. Michel, Y. Hadar, and D. Minz, Similarity of bacterial communities in sawdust- and straw-amended cow manure composts, FEMS Microbiology Letters, vol.233, issue.1, pp.115-123, 2004.
DOI : 10.1016/j.femsle.2004.01.049

R. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004.
DOI : 10.1093/nar/gkh340

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC390337

M. Gouy, S. Guindon, and O. Gascuel, SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-224, 2010.
DOI : 10.1093/molbev/msp259

URL : https://hal.archives-ouvertes.fr/lirmm-00705187

F. Chevenet, C. Brun, A. Banuls, B. Jacq, and C. R. , TreeDyn: towards dynamic graphics and annotations for analyses of trees, BMC Bioinformatics, vol.7, issue.1, p.439, 2006.
DOI : 10.1186/1471-2105-7-439

URL : https://hal.archives-ouvertes.fr/hal-00321061

M. Merroun, J. Raff, A. Rossberg, C. Hennig, and T. Reich, Complexation of Uranium by Cells and S-Layer Sheets of Bacillus sphaericus JG-A12, Applied and Environmental Microbiology, vol.71, issue.9, pp.5532-5543, 2005.
DOI : 10.1128/AEM.71.9.5532-5543.2005